Where computational biology expertise meets transformative data insights
In today's data-rich biological research environment, the difference between groundbreaking discovery and wasted resources often lies not in the generation of data, but in its intelligent analysis.
At Pine Bioanalytics, we bridge the gap between complex bioinformatics techniques and actionable biological insights. We believe that every dataset contains hidden stories waiting to be revealed through proper analytical techniques.
Unlike generic data science services, we specialize exclusively in biological data analysis with deep expertise in RNA-seq, single-cell genomics, chromatin accessibility, and microbiome analysis. This specialized focus means we understand not just the computational aspects, but the underlying biology that gives meaning to your data.
Our approach combines rigorous statistical methodology with biological intuition, ensuring that your research questions are answered with both computational precision and biological relevance.
With advanced capabilities in transcriptional analysis spanning bulk RNA-seq, single-cell sequencing, and chromatin accessibility studies, we extract maximum biological signal from complex datasets. Our metagenomic and 16S analysis pipelines unlock insights into microbial communities with unparalleled resolution.
Beyond technical execution, we pride ourselves on thoughtful experimental design consultations that ensure your sequencing projects are optimized from the start. We believe the best analysis begins before the first sample is even processed.
Generic data analysis might identify surface-level patterns, but our specialized biological expertise reveals the mechanistic insights that drive scientific breakthroughs. Whether you're a researcher navigating single-cell data for the first time or an established lab looking to extract deeper insights from your experimental results, Pine Analytics transforms your biological data into actionable discoveries.
Explore Our ServicesFull-pipeline bulk RNA-seq using DESeq2 or edgeR — QC, alignment, differential expression, and GSEA pathway enrichment with publication-ready figures delivered.
End-to-end scRNA-seq with Seurat or Scanpy — clustering, marker identification, trajectory inference with Monocle or PAGA, and spatial transcriptomics integration.
Peak calling, motif enrichment, and TF footprinting from ATAC-seq data — with optional co-analysis of matched RNA-seq for linked regulatory and expression profiles.
16S rRNA amplicon and shotgun metagenomic analysis with QIIME2, DADA2, and HUMAnN — from alpha/beta diversity metrics to functional pathway abundances.
Pre-sequencing consultation covering sample size, batch design, spike-in controls, and sequencing depth — catching costly design flaws before samples are ever processed.
Reproducible Snakemake or Nextflow pipelines built for your HPC or cloud environment — version-controlled, documented, and designed for lab handoff.
Beyond analysis, we provide strategic consulting to help you maximize the value of your biological data.
Combine RNA-seq, ATAC-seq, and metagenomic datasets for a comprehensive, systems-level view of your biological question.
Combine multiple data types for comprehensive insights into biological systems and mechanisms.
We help translate your computational results into publication-ready figures, methods sections, and supplementary materials that meet journal standards.
Contact us directly via email to discuss your project. Please include:
We'll respond to your inquiry within 24 hours.
or email us directly at
info@pinebioanalytics.com